Senior Data Engineer — Biomedical AI Foundation

Most diseases are still poorly understood at a biological level. Despite decades of research, the causal mechanisms driving many conditions remain unclear, limiting our ability to identify the right targets, design the right interventions and bring the right medicines to patients.

The AI Accelerator exists to change that. Based in London and sitting within Computational Innovation (@computationalinnovation), a global organisation spanning computational biology, human genetics, data excellence and AI, the Accelerator's mission is to build production-quality AI capabilities that deepen our understanding of disease biology and increase probability of success.

We do this by applying neural-based methods across the biomedical data landscape to integrate heterogeneous, multimodal data sources, infer biological relationships and embed causal thinking into what we build. The goal is not just to predict but to explain and understand why disease occurs.

It could be electronic health records and medical imaging to support patient segmentation. It could be 'omics data to identify novel therapeutic targets. It could be predicting transcriptional change for a given disease-causing variant. It could be simulating the effect of modulating a target of interest.

None of this is possible without data. The quality, accessibility and engineering of biomedical data ultimately determine the quality of the models built upon them. The Data Engineering function provides the foundation on which the AI Accelerator operates by integrating diverse clinical, biological and real-world datasets into trustworthy, AI-ready assets that can support large-scale foundation model development and downstream scientific discovery.

AI ACCELERATOR

Most diseases are still poorly understood at a biological level. Despite decades of research, the causal mechanisms driving many conditions remain unclear, limiting our ability to identify the right targets, design the right interventions and bring the right medicines to patients.

The AI Accelerator exists to change that. Based in London and sitting within Computational Innovation (@computationalinnovation), a global organisation spanning computational biology, human genetics, data excellence and AI, the Accelerator's mission is to build production-quality AI capabilities that deepen our understanding of disease biology and increase probability of success.

We do this by applying neural-based methods across the biomedical data landscape to integrate heterogeneous, multimodal data sources, infer biological relationships and embed causal thinking into what we build. The goal is not just to predict but to explain and understand why disease occurs.

It could be electronic health records and medical imaging to support patient segmentation. It could be 'omics data to identify novel therapeutic targets. It could be predicting transcriptional change for a given disease-causing variant. It could be simulating the effect of modulating a target of interest.

None of this is possible without data. The quality, accessibility and engineering of biomedical data ultimately determine the quality of the models built upon them. The Data Engineering function provides the foundation on which the AI Accelerator operates by integrating diverse clinical, biological and real-world datasets into trustworthy, AI-ready assets that can support large-scale foundation model development and downstream scientific discovery.

THE POSITION

We are seeking a Senior Staff Data Engineer to join Computational Innovation's AI Accelerator. In this role, you will own the data engineering architecture, standards and technical direction for the AI Accelerator, ensuring that our foundation-model ambitions are built upon high-quality data. You will define how diverse, multimodal, biomedical datasets are integrated and provisioned, creating the data foundation that enables model training, evaluation and deployment, supporting current research priorities and future scientific opportunities.

This is both a strategic and hands-on technical leadership role. You will define architectural standards and engineering practices, solve the most challenging data engineering problems yourself, and serve as the senior technical authority for data engineering within the AI Accelerator. As a senior member of the AI Enablement leadership team, you will help shape the direction of the function alongside the Senior Staff AI Infrastructure Engineer and Senior Staff MLOps Engineer.

This is a unique opportunity to be part of a critical strategic initiative for a pharmaceutical company that invests heavily in research and development to discover and develop innovative therapies that can improve and extend lives in areas of high unmet medical need. Your work will directly influence how effectively we can understand disease, identify therapeutic opportunities and accelerate the development of innovative medicines for patients.

Key Responsibilities

• Set the technical direction, strategy and roadmap for data engineering, aligned to AI Accelerator priorities.
• Own the data engineering architecture for the AI Accelerator, defining and evolving a layered ("medallion"-style) architecture, feature and embedding provisioning patterns, and the harmonised multimodal data foundation that underpins model development.
• Establish data engineering standards and engineering practices, including data quality controls, testing, CI/CD for data, reproducibility standards, data contracts, metadata management and dataset versioning.
• Deliver hands-on leadership on the most difficult and highest-impact data engineering challenges, including integrating novel and complex modalities such as genomics, transcriptomics, imaging, clinical and real-world datasets.
• Partner with the Data Excellence community and IT to align on governance, ontologies, metadata harmonisation, stewardship and shared enterprise data foundations.
• Establish ways of working and coach other team members, onboarding, mentoring and technically leading data engineers as the team scales, while acting as the senior escalation point for complex data engineering challenges.

Requirements

• PhD or MSc and equivalent experience in a STEM subject.
• Extensive experience operating at the senior staff level within a data engineering function, including defining architecture, standards and technical direction, along with mentoring data engineers and establishing strong engineering principles withing a growing team
• Deep expertise in large-scale data engineering, including distributed processing frameworks, pipeline orchestration, cloud data platforms and data integration at scale, with experience integrating internal and third-party datasets and working effectively with external data providers and technology partners.
• Strong understanding of biomedical and healthcare data domains, such as genomics, transcriptomics, multi-omics, imaging, clinical data, electronic health records or real-world data, alongside an understanding of machine learning data requirements, including versioning, reproducibility and tensor-based workflows for large-scale AI systems.
• Experience implementing data governance in practice, including metadata management, lineage, provenance, ontologies, cataloguing and FAIR principles and familiarity with Trusted Research Environments (TREs) and controlled-access research data environments.
• Strong collaboration and influencing skills across technical and non-technical stakeholders, with the ability to communicate complex technical concepts clearly.

This is a hybrid role with approximately 4 days a week in the office.

WHY THIS IS A GREAT PLACE TO WORK

Boehringer Ingelheim has been recognised as a Top Employer in the UK, demonstrating our commitment to building an exceptional workplace through strong people practices and supportive HR policies.

To learn more about why BI is a great place to work, visit:

Our Company
Boehringer Ingelheim is a biopharmaceutical company active in both human and animal health. As one of the industry's top investors in research and development, the company focuses on developing innovative therapies that can improve and extend lives in areas of high unmet medical need. Independent since its foundation in 1885, Boehringer takes a long-term perspective, embedding sustainability along the entire value chain. Our approximately 54,300 employees serve over 130 markets to build a healthier and more sustainable tomorrow. Learn more at Boehringer Ingelheim?

With us, you can develop your own path in a company with a culture that knows our differences are our strengths - and break new ground in the drive to make millions of lives better.

Here, your development is our priority. Supporting you to build a career as part of a workplace that is independent, authentic and bold, while tackling challenging work in a respectful and friendly environment where everyone is valued and welcomed.

Alongside, you have access to programs and groups that ensure your health and wellbeing are looked after - as we make major investments to drive global accessibility to healthcare. By being part of a team that is constantly innovating, you'll be helping to transform lives for generations.

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